Nanobody, Nanobodies

"Nanobodies are relatively simple proteins about a tenth the size of antibodies and just a few nanometers in length--may one day yield new medicines for Alzheimer's and other diseases beyond the reach of current antibodies, but that is not the opening strategy Vaeck chose. Instead he directed his scientists to create nanobodies that do what some of the best-selling antibodies do, only better. According to Medco Health Solutions, treating an asthmatic patient with the antibody Xolair costs about $11,000 a year for the drug alone. Remicade, for rheumatoid arthritis, runs about $4,600 for eight shots. A year's course of Herceptin, an antibody cancer therapy, soars over $38,000.

MAbs are so expensive primarily because they are so complex. By molecular standards antibodies are enormous, each one a conglomerate of two heavy protein chains and two light chains, intricately folded and garnished with elaborate sugars. To make a MAb medicine, scientists usually begin with an antibody isolated from mice. They then "humanize" the molecule by tinkering with the genes that encode it to replace some or all of the protein with amino acid sequences copied from human antibodies. (Alternatively, a few companies have genetically engineered mice so that they produce nearly human antibodies directly.)

The humanization reduces the potentially dangerous side effects that antibody therapies often generate when the patient's body perceives the MAbs as foreign invaders and launches an immune attack on the medicine. But the humanization process often consumes many months of highly technical work. And the resulting macromolecules are so complicated that they cannot be synthesized from chemical building blocks, as conventional drugs are. Instead they must be grown in bioreactor vats of mammalian cells that have been engineered to carry the multiple genes needed to make a single antibody. Cell cultures of this kind do not scale easily for mass production. MAb factories are much more expensive to build and operate than are similarly sized chemical or microbial biosynthesis plants. Drug companies must ensure, for example, that their vats do not take sick with a virus that might ruin the valuable cells or contaminate the antibodies. A recent analysis by Mark C. Via, published by Cambridge Healthtech Advisors, concluded that demand for monoclonal antibodies most likely will far outstrip production capacity for years to come. All these factors conspire to drive up the price of antibody therapies.

The great size of the proteins also imposes practical and medical limitations. High temperatures or extremes of pH make MAbs unravel. They typically expire in weeks unless stored near freezing temperatures. Antibodies are digested quickly in the gut, blocked from entering the brain and held to the periphery of solid tumors. Many illnesses are thus unreachable by monoclonals, and patients who can use MAb therapies must receive them by injection at a clinic. For certain conditions in which MAbs do not work well, and even for some in which they currently do, simpler, smaller proteins might perform better and be easier to make, easier to handle, easier to take and thus more affordable. This idea predates the invention of nanobodies by many years. In the 1980s protein engineers began experimenting with antibody fragments created by chopping off the stem of the Y, or sometimes the stem and an arm, leaving just one "hand" to do the chemical duty of the antibody.

Like full-size MAbs, these antibody fragments (nicknamed Fabs) can treat illnesses by binding to toxins, pathogens or aberrant cell signals--or alternatively to the cell receptors to which those undesirable molecules dock. But antibody fragments cannot recruit other components of the immune system, such as killer T cells, in the same way that full-size antibodies do, because they lack the protein stem that performs that task.

In their favor, Fabs can be manufactured by bacteria, yeast or fungi, which are less expensive than the mouse or hamster cells needed to synthesize antibodies. Fabs can sneak into the center of tumors, and molecular engineers can rig them to tow toxic payloads--such as radioactive isotopes or chemotherapy drugs--directly to diseased tissue.

On the other hand, Fabs tend to fall apart or filter out of the bloodstream quickly, and so their active half-life typically amounts to mere hours rather than the weeks that full-size antibodies can persist within the body. Fast clearance may be just what is wanted for delivering a toxin, but for many medicines it is a disadvantage. So far only one therapeutic Fab has made it to market in the U.S., and that more than a decade ago.

Some companies, such as Domantis in Cambridge, Mass., have trimmed Fabs further, stripping away all but the tip of one of the two chains. This segment, which is unique to each model of antibody, contains the critical chemical fingers known as complementarity determining regions (CDRs), that determine what target an antibody will recognize--its antigen--and how tightly the two will bind when they meet. The resulting domain antibodies, as Domantis calls its proteins, are similar in size to the nanobodies that Ablynx makes. But domain proteins evolved as segments of much larger, double-chained antibodies, and that has made them inherently sticky, explains Serge Muyldermans, a protein biologist at the Free University of Brussels. The fragments thus agglomerate together inside the bacteria that make them, as well as inside the patients that take them. The stickiness of the molecules lowers their production yields and hinders them in their work.

While biochemists continue trying to reengineer antibody fragments to solve these problems, Ablynx is exploiting an alternative offered by nature. In 1989 Muyldermans was among a group of biologists led by Raymond Hamers at the Free University that investigated an odd observation handed in as part of a student project on how dromedary camels (the one-humped, Arabian variety) and water buffalo fight off parasites. One of the tests for antibodies in the dromedary blood seemed to show an error: in addition to normal four-chain antibodies, it indicated the presence of simpler antibodies composed solely of a pair of heavy chains.

After several years of investigation, Hamers, Muyldermans and their colleagues published their serendipitous discovery in Nature in 1993. In dromedaries--and also in two-humped Asian camels and South American llamas--about half the antibodies circulating in the blood lack a light chain. Equally surprising, they found, these "incomplete" antibodies are able to grasp their targets just as firmly as normal antibodies do, despite having only half as many CDRs. And unlike Fabs, the heavy-chain-only antibodies do not stick to one another.

Why species in the camel family differ from all other mammals in this respect remains a mystery, but evolution may have handed scientists a work-around for some of the thorniest problems with antibodies and antibody fragments. When Muyldermans's group pared these novel molecules down to just their distinctive, variable segments, the segments retained amazingly strong affinity for their targets, virtually equal to a full antibody 10 times their size. These shortened proteins were also more chemically agile, able to engage targets--including the active sites of enzymes and clefts in cell membranes--too small to admit an antibody. Nanobodies were born, and Ablynx soon followed. Because nanobodies are so much smaller than antibodies and are not chemical hydrophobes (as are domain antibodies), they are more resistant to heat and pH, Muyldermans says. Pieter Rottiers and Hilde Revets of the Flanders Institute for Biotechnology (VIB) in Belgium have shown that the compounds retain their activity as they pass through the gastrointestinal tract of mice, raising the prospect of nanobody pills to treat inflammatory bowel disease, colon cancer and other disorders of the gut.

Because nanobodies are so much simpler than antibodies in chemical composition and shape, they can be encoded by a single gene and are easier for microbes to synthesize. In 2002 biologists at Unilever Research in the Netherlands brewed more than a kilogram of nanobodies from a standard 15,000-liter tank of yeast (a yield of 67 milligrams per liter), whereas Ablynx scientists report recent yields exceeding a gram of nanobodies per liter of yeast culture--production rates that far exceed those typical for full-size antibodies. "Plus, our nanobodies are stable at room temperature and have a long shelf life without refrigeration," asserts Tim Van Hauwermeiren, who manages business development for the company.

The creation of new kinds of nanobodies is less difficult--and thus faster and less costly--than it is for antibodies, Van Hauwermeiren claims. By immunizing llamas with the target antigen and then extracting heavy-chain-only antibodies from their blood, he says, "we can go from isolated target antigen to high-affinity nanobodies within four months." For some conditions, such as rheumatoid arthritis, the nanobody may serve unadorned as a medicine by jamming harmful cellular signals, either by attaching to the signal molecule or by clogging up the receptors for the signal on the surface of cells.

One of the most powerful advantages of nanobodies, however, is the relative ease with which the proteins can be joined to one another or to different kinds of compounds, de Haard says. His team has attached anti-albumin nanobodies to target-specific nanobodies to extend their half-lives in the bloodstream to weeks, he says. They have linked up to four nanobodies to create "multivalent" assemblies that can sop up more antigen per molecule or bind to either, or both, of two different targets.

Recently Revets, Muyldermans and Patrick De Baetselier of VIB published impressive results from an experiment in which they designed nanobodies to bind to a receptor on cancer cells, thus sticking to any tumors the molecules encounter. The researchers tailored a group of such nanobodies to be bifunctional by connecting each protein to an enzyme; the enzyme converts another chemical, called a prodrug, from its normal harmless form into a toxic chemotherapy that kills cells in the immediate vicinity.

The "patients" were mice that the scientists injected with human cancer cells, which soon grew into marble-size tumors. Revets treated some of the mice with the chemotherapy alone; those animals got sick and lost weight, just as happens in all chemotherapies. Their tumors shrank only a little. But the doctors gave another group of mice a high dose of the bifunctional nanobody with its attached enzyme. They waited a bit to give the unbound nanobodies time to filter out of the body, then injected the prodrug. As hoped, the nanobodies focused the chemotherapy on the cancer, sparing healthy tissues while completely driving back the tumors. Until nanobodies make it through clinical trials, no one knows whether they will work as well in people as they do in mice. But if nanobodies do have an Achilles' heel, it is very likely to be the immune system itself. Ablynx scientists have worked out ways to humanize nanobodies, and studies with baboons have found that they raise no immune response to the tiny llama proteins. But de Haard acknowledges that nanobodies might not be able to evade the more sophisticated web of cellular surveillance that protects humans. The results of next year's clinical safety trials will determine whether nanobodies continue advancing at the recent breakneck pace or get tripped up by the complexities of the human immune system."


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